- median value of markers in each cluster
7/18/2018
## Running PhenoGraph... Finding nearest neighbors...DONE ~ 0.105 s ## Compute jaccard coefficient between nearest-neighbor sets...DONE ~ 1.376 s ## Build undirected graph from the weighted links...DONE ~ 0.229 s ## Run louvain clustering on the graph ...DONE ~ 0.097 s ## Return a community class ## -Modularity value: 0.8954807 ## -Number of clusters: 16 DONE!
## Running t-SNE...with seed 42 DONE
## ## FALSE TRUE ## 67 12